Prediction : 5-benzamido-2-4-methylpiperidino-n-2r-tetrahydrofuran-2-ylmethylbenzamide - albumin

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Reference

When using this server please cite the following paper:

Zsila F, Bikadi Z, Malik D, Hari P, Pechan I, Berces A, Hazai E.

Evaluation of drug-human serum albumin binding interactions with support vector machine aided online automated docking.

Bioinformatics. 2011 May 18.

Prediction summary

SVM prediction results:

SVM : albumin prediction

Prediction result: Albumin ligand (prediction accuracy: 92.1%), binding site 1 (prediction accuracy: 80.0%)

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Please note that binding site 3 prediction is not included in the built in SVM model.

Calculated physicochemical properties:

Molecular Weight	=	421.590
logP	=	3.513
Ghose-Viswanadhan-Wendoloski antiinflammatory-like index	=	0.000
number of carboxylic acids (aliphatic)	=	0
number of substituted benzene C(sp2)	=	4

Ligand Similarity:

In the following tables the similarities of the query compound to the original X-Ray compunds are presented. Similarity is calculated based on Tanimoto fingerprints. The value ranges from 0 to 1, with 1 being identical to the original X-Ray compound.

Site 1_IIA
Iodipamide	0.436
Compound 2	0.385
Compound 1	0.361
Phenylbutazone	0.269
Indomethacin	0.266
Azapropazone	0.222
Dansyl-L-asparagine	0.202
Salicylic acid	0.171
L-Thyroxine	0.171
Diiodosalicylic acid	0.170
R-Warfarin	0.116
CMPF	0.114

Site 2_IIIA
Diazepam	0.232
Dansyl-L-norvaline	0.214
Dansyl-L-sarcosine	0.196
Diflunisal	0.172
L-Thyroxine	0.171
(S)-Ibuprofen	0.148
Propofol	0.130
Indoxyl sulphate	0.121

Site 3_IB
Azapropazone	0.228
Bilirubin	0.168
Fusidic acid	0.133
Compound 3	0.131

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Chemical structure